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'''Klone''' is the latest version of hyak, the UW super computing system. We will soon have a larger allocation of machines on Klone than on Mox. The Klone machines have 40 cores and either 384GB or 768GB of RAM | '''Klone''' is the latest version of hyak, the UW super computing system. We will soon have a larger allocation of machines on Klone than on Mox. The Klone machines have 40 cores and either 384GB or 768GB of RAM. | ||
== Setting up SSH == | == Setting up SSH == | ||
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We created commands (e.g., <code>python3</code>, <code>Rscript</code>, <code>jupyter-console</code>) that run the containerized version of the program. The full list of such commands is in <code>/gscratch/comdata/containers/bin</code>. | We created commands (e.g., <code>python3</code>, <code>Rscript</code>, <code>jupyter-console</code>) that run the containerized version of the program. The full list of such commands is in <code>/gscratch/comdata/containers/bin</code>. | ||
Importantly, installing packages in R, Python (e.g., using pip) or other programming languages should usually work normally because the containers already have the most common dependencies. Installing packages this way will not update the container | Importantly, installing packages in R, Python (e.g., using pip) or other programming languages should usually work normally because the containers already have the most common dependencies. Installing packages this way will not update the container, instead the packages will be installed in your user directory. This is desirable so that different container users do not break each other's environments. It may happen that an installation fails because it requires a missing dependency from the operating system. If this happens you can try to add the dependency to the container as described below. If this seems | ||
challenging or complicated or you need many changes to the container, or changes you don't understand, reach out to the IT team. | challenging or complicated or you need many changes to the container, or changes you don't understand, reach out to the IT team. | ||