Editing CommunityData:Hyak migration
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# Copy data (only raw data, data that we are using in current and future projects) | # Copy data (only raw data, data that we are using in current and future projects) | ||
# Copy code (Everyone copy their own user directory) | # Copy code (Everyone copy their own user directory) | ||
# Create a shared .bashrc that everyone will load. This will provide us with a shared environment (python, R, other packages, useful aliases). | # Create a shared .bashrc that everyone will load. This will provide us with a shared environment (python, R, other packages, useful aliases). | ||
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#Jeremy | #Jeremy | ||
#Jim? | #Jim? | ||
== Shared environment design == | == Shared environment design == | ||
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=== Add packages you want below! === | === Add packages you want below! === | ||
* zsh | |||
* Spark 2.4 | |||
* Python 3.7 | |||
* R 3.5.2 | |||
* moreutils 0.62 | |||
* emacs 25 | |||
* p7zip 16.02 | |||
* htop 2.2.0 | |||
* pandoc 2.2.1 | |||
=== RStudio Server === | === RStudio Server === | ||
It could be nice to run an RStudio server on the interactive node to provide a nicer IDE for working interactively on hyak compared to Jupyter notebooks or editing in the terminal. If this isn't feasible then we should use kibo for this purpose instead. | It could be nice to run an RStudio server on the interactive node to provide a nicer IDE for working interactively on hyak compared to Jupyter notebooks or editing in the terminal. If this isn't feasible then we should use kibo for this purpose instead. | ||
= | === Scheduler Options === | ||
== Scheduler Options == | |||
It might be a good idea to ask the hyak folks to configure the scheduler for our partition so that we can request specific quantities of memory or cpus in our jobs. [https://wiki.cac.washington.edu/display/hyakusers/Mox_scheduler#Mox_scheduler-BatchusageSingleNode: (Hyak Wiki)] | It might be a good idea to ask the hyak folks to configure the scheduler for our partition so that we can request specific quantities of memory or cpus in our jobs. [https://wiki.cac.washington.edu/display/hyakusers/Mox_scheduler#Mox_scheduler-BatchusageSingleNode: (Hyak Wiki)] | ||